2001 Annual Science Report

Harvard University Reporting  |  JUL 2000 – JUN 2001

The Planetary Context of Biological Evolution: Molecular and Isotopic Approaches to Microbial Ecology and Biogeochemistry

4 Institutions
3 Teams
0 Publications
0 Field Sites
Field Sites

Project Progress

Molecular and Isotopic Approaches to Microbial Ecology and Biogeochemistry (dm)

The Harvard team has been working to develop techniques for the analysis of 13C in sub-nanomole quantities of nucleic acids. Thus far, we have demonstrated accurate analyses of sub-nanomole quantities of carbon in samples of nucleic acids and have gained experience with the isolation of native RNA from laboratory cultures and natural samples. Our goal is to use probe-capture techniques for the isolation of specific nucleic acids. At present, we can obtain high purity (i. e., capture of RNA from only a single species) or reasonable yield, but not both at the same time. We are continuing to pursue techniques with high genomic resolution and expect eventual success.

We have collaborated with NASA Ames in studies of the fractionation of hydrogen isotopes by methanotrophic bacteria. These organisms provide an ideal entry point to the study of unicellular systems because H can flow from only two possible sources, the C-H bonds of methane or the O-H bonds of water. Interactions with the Ames group also led to the identification of a series of cultures of sulfate-reducing bacteria. We have completed hydrogen-isotopic analyses of the lipids from these same samples. We have also worked with members of the Ames group in investigations of carbon-isotopic biogeochemical studies of hydrothermal vent microbial communities. Hayes has completed a major review entitled “Fractionation of the isotopes of carbon and hydrogen in biosynthetic processes.”

We are beginning to investigate how methane functioned in Earth’s early atmosphere, using detailed studies of how methanogenesis occurs in modern sediments, and working to calculate the rates of microbial reactions. We are also developing the ability to measure calcium isotopes with high precision to investigate biomineralization in Proterozoic sediments.

  • PROJECT INVESTIGATORS:
  • PROJECT MEMBERS:
    John Hayes
    Co-Investigator

    Daniel Schrag
    Co-Investigator

    Katrina Edwards
    Collaborator

    Kai-Uwe Hinrichs
    Collaborator

    Kathleen Londry
    Collaborator

    Roger Summons
    Collaborator

    Marylynn Musgrove
    Postdoc

    Ann Pearson
    Postdoc

    Kira Pratt
    Research Staff

    Sean Sylva
    Research Staff

    Alexander Sessions
    Doctoral Student

    Brian Fehlau
    Graduate Student

  • RELATED OBJECTIVES:
    Objective 4.0
    Expand and interpret the genomic database of a select group of key microorganisms in order to reveal the history and dynamics of evolution.

    Objective 5.0
    Describe the sequences of causes and effects associated with the development of Earth's early biosphere and the global environment.

    Objective 6.0
    Define how ecophysiological processes structure microbial communities, influence their adaptation and evolution, and affect their detection on other planets.

    Objective 13.0
    Define an array of astronomically detectable spectroscopic features that indicate habitable conditions and/or the presence of life on an extrasolar planet.